Geir Kjetil Sandve
Position: Post. doc.

See Geir Kjetil Sandves home page at UiO/IFI


Author network for Geir Kjetil Sandve by COREMINE medical

Publications 2017

Alsøe L, Sarno A, Carracedo S, Domanska D, Dingler F, Lirussi L, SenGupta T, Tekin NB, Jobert L, Alexandrov LB, Galashevskaya A, Rada C, Sandve GK, Rognes T, Krokan HE, Nilsen H (2017)
Uracil Accumulation and Mutagenesis Dominated by Cytosine Deamination in CpG Dinucleotides in Mice Lacking UNG and SMUG1
Sci Rep, 7 (1), 7199
PubMed 28775312

Domanska D, Vodák D, Lund-Andersen C, Salvatore S, Hovig E, Sandve GK (2017)
The rainfall plot: its motivation, characteristics and pitfalls
BMC Bioinformatics, 18 (1), 264
PubMed 28521741

Kanduri C, Domanska D, Hovig E, Sandve GK (2017)
Genome build information is an essential part of genomic track files
Genome Biol, 18 (1), 175
PubMed 28911336

Khelik K, Lagesen K, Sandve GK, Rognes T, Nederbragt AJ (2017)
NucDiff: in-depth characterization and annotation of differences between two sets of DNA sequences
BMC Bioinformatics, 18 (1), 338
PubMed 28701187

Rand KD, Grytten I, Nederbragt AJ, Storvik GO, Glad IK, Sandve GK (2017)
Coordinates and intervals in graph-based reference genomes
BMC Bioinformatics, 18 (1), 263
PubMed 28521770

Roy B, Neumann RS, Snir O, Iversen R, Sandve GK, Lundin KEA, Sollid LM (2017)
High-Throughput Single-Cell Analysis of B Cell Receptor Usage among Autoantigen-Specific Plasma Cells in Celiac Disease
J Immunol, 199 (2), 782-791
PubMed 28600290

Simovski B, Vodák D, Gundersen S, Domanska D, Azab A, Holden L, Holden M, Grytten I, Rand K, Drabløs F, Johansen M, Mora A, Lund-Andersen C, Fromm B, Eskeland R, Gabrielsen OS, Ferkingstad E, Nakken S, Bengtsen M, Nederbragt AJ, Thorarensen HS, Akse JA, Glad I, Hovig E, Sandve GK (2017)
GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome
Gigascience, 6 (7), 1-12
PubMed 28459977

Publications 2016

Børnich C, Grytten I, Hovig E, Paulsen J, Čech M, Sandve GK (2016)
Galaxy Portal: interacting with the galaxy platform through mobile devices
Bioinformatics, 32 (11), 1743-5
PubMed 26819474

Publications 2015

Bengtsen M, Klepper K, Gundersen S, Cuervo I, Drabløs F, Hovig E, Sandve GK, Gabrielsen OS, Eskeland R (2015)
c-Myb Binding Sites in Haematopoietic Chromatin Landscapes
PLoS One, 10 (7), e0133280
PubMed 26208222

Christiansen IK, Sandve GK, Schmitz M, Dürst M, Hovig E (2015)
Transcriptionally active regions are the preferred targets for chromosomal HPV integration in cervical carcinogenesis
PLoS One, 10 (3), e0119566
PubMed 25793388

Ferkingstad E, Holden L, Sandve GK (2015)
Monte Carlo Null Models for Genomic Data
Stat. Sci., 30 (1), 59-71

Mora A, Sandve GK, Gabrielsen OS, Eskeland R (2015)
In the loop: promoter-enhancer interactions and bioinformatics
Brief Bioinform, 17 (6), 980-995
PubMed 26586731

Ricigliano VA, Handel AE, Sandve GK, Annibali V, Ristori G, Mechelli R, Cader MZ, Salvetti M (2015)
EBNA2 binds to genomic intervals associated with multiple sclerosis and overlaps with vitamin D receptor occupancy
PLoS One, 10 (4), e0119605
PubMed 25853421

Rydbeck H, Sandve GK, Ferkingstad E, Simovski B, Rye M, Hovig E (2015)
ClusTrack: feature extraction and similarity measures for clustering of genome-wide data sets
PLoS One, 10 (4), e0123261
PubMed 25879845

Publications 2014

Molyneux SD, Waterhouse PD, Shelton D, Shao YW, Watling CM, Tang QL, Harris IS, Dickson BC, Tharmapalan P, Sandve GK, Zhang X, Bailey SD, Berman H, Wunder JS, Izsvák Z, Lupien M, Mak TW, Khokha R (2014)
Human somatic cell mutagenesis creates genetically tractable sarcomas
Nat Genet, 46 (9), 964-72
PubMed 25129143

Paulsen J, Sandve GK, Gundersen S, Lien TG, Trengereid K, Hovig E (2014)
HiBrowse: multi-purpose statistical analysis of genome-wide chromatin 3D organization
Bioinformatics, 30 (11), 1620-2
PubMed 24511080

Rye M, Sandve GK, Daub CO, Kawaji H, Carninci P, Forrest AR, Drabløs F, FANTOM consortium (2014)
Chromatin states reveal functional associations for globally defined transcription start sites in four human cell lines
BMC Genomics, 15, 120
PubMed 24669905

Publications 2013

Handel AE, Sandve GK, Disanto G, Berlanga-Taylor AJ, Gallone G, Hanwell H, Drabløs F, Giovannoni G, Ebers GC, Ramagopalan SV (2013)
Vitamin D receptor ChIP-seq in primary CD4+ cells: relationship to serum 25-hydroxyvitamin D levels and autoimmune disease
BMC Med, 11, 163
PubMed 23849224

Handel AE, Sandve GK, Disanto G, Handunnetthi L, Giovannoni G, Ramagopalan SV (2013)
Integrating multiple oestrogen receptor alpha ChIP studies: overlap with disease susceptibility regions, DNase I hypersensitivity peaks and gene expression
BMC Med Genomics, 6, 45
PubMed 24171864

Paulsen J, Lien TG, Sandve GK, Holden L, Borgan O, Glad IK, Hovig E (2013)
Handling realistic assumptions in hypothesis testing of 3D co-localization of genomic elements
Nucleic Acids Res, 41 (10), 5164-74
PubMed 23571755

Sandve GK, Gundersen S, Johansen M, Glad IK, Gunathasan K, Holden L, Holden M, Liestøl K, Nygård S, Nygaard V, Paulsen J, Rydbeck H, Trengereid K, Clancy T, Drabløs F, Ferkingstad E, Kalas M, Lien T, Rye MB, Frigessi A, Hovig E (2013)
The Genomic HyperBrowser: an analysis web server for genome-scale data
Nucleic Acids Res, 41 (Web Server issue), W133-41
PubMed 23632163

Sandve GK, Nekrutenko A, Taylor J, Hovig E (2013)
Ten simple rules for reproducible computational research
PLoS Comput Biol, 9 (10), e1003285
PubMed 24204232

Publications 2012

Disanto G, Sandve GK, Berlanga-Taylor AJ, Morahan JM, Dobson R, Giovannoni G, Ramagopalan SV (2012)
Genomic regions associated with multiple sclerosis are active in B cells
PLoS One, 7 (3), e32281
PubMed 22396755

Disanto G, Sandve GK, Berlanga-Taylor AJ, Ragnedda G, Morahan JM, Watson CT, Giovannoni G, Ebers GC, Ramagopalan SV (2012)
Vitamin D receptor binding, chromatin states and association with multiple sclerosis
Hum Mol Genet, 21 (16), 3575-86
PubMed 22595971

Watson CT, Disanto G, Sandve GK, Breden F, Giovannoni G, Ramagopalan SV (2012)
Age-associated hyper-methylated regions in the human brain overlap with bivalent chromatin domains
PLoS One, 7 (9), e43840
PubMed 23028473

Publications 2011

Bruhn S, Barrenäs F, Mobini R, Andersson BA, Chavali S, Egan BS, Hovig E, Sandve GK, Langston MA, Rogers G, Wang H, Benson M (2011)
Increased expression of IRF4 and ETS1 in CD4+ cells from patients with intermittent allergic rhinitis
Allergy, 67 (1), 33-40
PubMed 21919915

Gundersen S, Kalaš M, Abul O, Frigessi A, Hovig E, Sandve GK (2011)
Identifying elemental genomic track types and representing them uniformly
BMC Bioinformatics, 12, 494
PubMed 22208806

Sandve GK, Ferkingstad E, Nygård S (2011)
Sequential Monte Carlo multiple testing
Bioinformatics, 27 (23), 3235-41
PubMed 21998154

Sandve GK, Gundersen S, Rydbeck H, Glad IK, Holden L, Holden M, Liestøl K, Clancy T, Drabløs F, Ferkingstad E, Johansen M, Nygaard V, Tøstesen E, Frigessi A, Hovig E (2011)
The differential disease regulome
BMC Genomics, 12, 353
PubMed 21736759

Publications 2010

Sandve GK, Gundersen S, Rydbeck H, Glad IK, Holden L, Holden M, Liestøl K, Clancy T, Ferkingstad E, Johansen M, Nygaard V, Tøstesen E, Frigessi A, Hovig E (2010)
The Genomic HyperBrowser: inferential genomics at the sequence level
Genome Biol, 11 (12), R121
PubMed 21182759

Publications 2008

Klepper K, Sandve GK, Abul O, Johansen J, Drablos F (2008)
Assessment of composite motif discovery methods
BMC Bioinformatics, 9, 123
PubMed 18302777

Sandve GK, Abul O, Drabløs F (2008)
Compo: composite motif discovery using discrete models
BMC Bioinformatics, 9, 527
PubMed 19063744

Tøstesen E, Sandve GK, Liu F, Hovig E (2008)
Segmentation of DNA sequences into twostate regions and melting fork regions
J Phys Condens Matter, 21 (3), 034109
PubMed 21817254

Publications 2007

Sandve GK, Abul O, Walseng V, Drabløs F (2007)
Improved benchmarks for computational motif discovery
BMC Bioinformatics, 8, 193
PubMed 17559676

Publications 2006

Abul O, Drabløs F, Sandve GK (2006)
A methodology for motif discovery employing iterated cluster re-assignment
Comput Syst Bioinformatics Conf, 257-68
PubMed 17369644

Sandve GK, Drabløs F (2006)
A survey of motif discovery methods in an integrated framework
Biol Direct, 1, 11
PubMed 16600018