Publications 2026

Lindeman I, Officer A, Dahal-Koirala S, Risnes LF, Hjort R, Lundin KEA, Ness-Jensen E, Watson CT, Sollid LM (2026)
A predisposing effect of HLA class II genes in celiac disease by skewing the naive CD4⁺ T cell receptor repertoire
Proc Natl Acad Sci U S A, 123 (26), e2520636123
DOI 10.1073/pnas.2520636123, PubMed 42361043

Officer A, Watson CT, Engelbrecht E, Dahal-Koirala S, Risnes LF, Lundin KEA, Ness-Jensen E, Lindeman I, Sollid LM (2026)
Immunoglobulin gene polymorphisms shape the naïve B-cell receptor repertoire; relevance to celiac disease
Genes Immun, 27 (2), 210-222
DOI 10.1038/s41435-026-00384-4, PubMed 41748905

Vaz F, Lindeman I, Hoffmann HH, Skagen C, Steffensen AK, Bjørnholt JV, Tjønnfjord GE, Lundin KEA, Sollid LM, Iversen R (2026)
Distinct systemic and gut IgA responses to bacteria of the human upper gastrointestinal tract
Cell Rep, 45 (8), 117721 (in press)
DOI 10.1016/j.celrep.2026.117721, PubMed 42497062

Publications 2024

Lindeman I, Høydahl LS, Christophersen A, Risnes LF, Jahnsen J, Lundin KEA, Sollid LM, Iversen R (2024)
Generation of circulating autoreactive pre-plasma cells fueled by naive B cells in celiac disease
Cell Rep, 43 (4), 114045
DOI 10.1016/j.celrep.2024.114045, PubMed 38578826

Publications 2023

Polak J, Wagnerberger JH, Torsetnes SB, Lindeman I, Høglund RAA, Vartdal F, Sollid LM, Lossius A (2023)
Single-cell transcriptomics combined with proteomics of intrathecal IgG reveal transcriptional heterogeneity of oligoclonal IgG-secreting cells in multiple sclerosis
Front Cell Neurosci, 17, 1189709
DOI 10.3389/fncel.2023.1189709, PubMed 37362001

Publications 2022

Gupta N, Lindeman I, Reinhardt S, Mariotti-Ferrandiz E, Mujangi-Ebeka K, Martins-Taylor K, Eugster A (2022)
Single-Cell Analysis and Tracking of Antigen-Specific T Cells: Integrating Paired Chain AIRR-Seq and Transcriptome Sequencing: A Method by the AIRR Community
Methods Mol Biol, 2453, 379-421
DOI 10.1007/978-1-0716-2115-8_20, PubMed 35622336

Lindeman I, Polak J, Qiao SW, Holmøy T, Høglund RA, Vartdal F, Berg-Hansen P, Sollid LM, Lossius A (2022)
Stereotyped B-cell responses are linked to IgG constant region polymorphisms in multiple sclerosis
Eur J Immunol, 52 (4), 550-565
DOI 10.1002/eji.202149576, PubMed 35094395

Publications 2021

Lindeman I, Sollid LM (2021)
Single-cell approaches to dissect adaptive immune responses involved in autoimmunity: the case of celiac disease
Mucosal Immunol, 15 (1), 51-63
DOI 10.1038/s41385-021-00452-0, PubMed 34531547

Lindeman I, Zhou C, Eggesbø LM, Miao Z, Polak J, Lundin KEA, Jahnsen J, Qiao SW, Iversen R, Sollid LM (2021)
Longevity, clonal relationship, and transcriptional program of celiac disease-specific plasma cells
J Exp Med, 218 (2)
DOI 10.1084/jem.20200852, PubMed 33095260

Publications 2020

Mikocziova I, Gidoni M, Lindeman I, Peres A, Snir O, Yaari G, Sollid LM (2020)
Polymorphisms in human immunoglobulin heavy chain variable genes and their upstream regions
Nucleic Acids Res, 48 (10), 5499-5510
DOI 10.1093/nar/gkaa310, PubMed 32365177

Publications 2019

Gidoni M, Snir O, Peres A, Polak P, Lindeman I, Mikocziova I, Sarna VK, Lundin KEA, Clouser C, Vigneault F, Collins AM, Sollid LM, Yaari G (2019)
Mosaic deletion patterns of the human antibody heavy chain gene locus shown by Bayesian haplotyping
Nat Commun, 10 (1), 628
DOI 10.1038/s41467-019-08489-3, PubMed 30733445

Lindeman I, Stubbington MJT (2019)
Antigen Receptor Sequence Reconstruction and Clonality Inference from scRNA-Seq Data
Methods Mol Biol, 1935, 223-249
DOI 10.1007/978-1-4939-9057-3_15, PubMed 30758830

Miragaia RJ, Gomes T, Chomka A, Jardine L, Riedel A, Hegazy AN, Whibley N, Tucci A, Chen X, Lindeman I, Emerton G, Krausgruber T, Shields J, Haniffa M, Powrie F, Teichmann SA (2019)
Single-Cell Transcriptomics of Regulatory T Cells Reveals Trajectories of Tissue Adaptation
Immunity, 50 (2), 493-504.e7
DOI 10.1016/j.immuni.2019.01.001, PubMed 30737144

Publications 2018

Lindeman I, Emerton G, Mamanova L, Snir O, Polanski K, Qiao SW, Sollid LM, Teichmann SA, Stubbington MJT (2018)
BraCeR: B-cell-receptor reconstruction and clonality inference from single-cell RNA-seq
Nat Methods, 15 (8), 563-565
DOI 10.1038/s41592-018-0082-3, PubMed 30065371

Yao Y, Zia A, Wyrożemski Ł, Lindeman I, Sandve GK, Qiao SW (2018)
Exploiting antigen receptor information to quantify index switching in single-cell transcriptome sequencing experiments
PLoS One, 13 (12), e0208484
DOI 10.1371/journal.pone.0208484, PubMed 30517183

Publications 2017

Schjerven H, Ayongaba EF, Aghajanirefah A, McLaughlin J, Cheng D, Geng H, Boyd JR, Eggesbø LM, Lindeman I, Heath JL, Park E, Witte ON, Smale ST, Frietze S, Müschen M (2017)
Genetic analysis of Ikaros target genes and tumor suppressor function in BCR-ABL1⁺ pre-B ALL
J Exp Med, 214 (3), 793-814
DOI 10.1084/jem.20160049, PubMed 28190001