Baoyan Bai

  • Postdoc; PhD

Publications 2022

Huse K, Bai B, Hilden VI, Bollum LK, Våtsveen TK, Munthe LA, Smeland EB, Irish JM, Wälchli S, Myklebust JH (2022)
Mechanism of CD79A and CD79B Support for IgM+ B Cell Fitness through B Cell Receptor Surface Expression
J Immunol, 209 (10), 2042-2053
DOI 10.4049/jimmunol.2200144, PubMed 36426942

Jia X, Ma Z, Kong D, Li Y, Hu H, Guan L, Yan J, Zhang R, Gu Y, Chen X, Shi L, Luo X, Li Q, Bai B, Ye X, Zhai H, Zhang H, Dong Y, Xu L, Zhou J, Caau (2022)
Novel Human Artificial Intelligence Hybrid Framework Pinpoints Thyroid Nodule Malignancy and Identifies Overlooked Second-Order Ultrasonographic Features
Cancers (Basel), 14 (18)
DOI 10.3390/cancers14184440, PubMed 36139599

Publications 2021

Oksvold MP, Berglund UW, Gad H, Bai B, Stokke T, Rein ID, Pham T, Sanjiv K, Øy GF, Norum JH, Smeland EB, Myklebust JH, Helleday T, Våtsveen TK (2021)
Karonudib has potent anti-tumor effects in preclinical models of B-cell lymphoma
Sci Rep, 11 (1), 6317
DOI 10.1038/s41598-021-85613-8, PubMed 33737576

Publications 2020

Bai B, Myklebust JH, Wälchli S (2020)
Gene Editing in B-Lymphoma Cell Lines Using CRISPR/Cas9 Technology
Methods Mol Biol, 2115, 445-454
DOI 10.1007/978-1-0716-0290-4_25, PubMed 32006416

Wang S, Somisetty VS, Bai B, Chernukhin I, Niskanen H, Kaikkonen MU, Bellet M, Carroll JS, Hurtado A (2020)
The proapoptotic gene interferon regulatory factor-1 mediates the antiproliferative outcome of paired box 2 gene and tamoxifen
Oncogene, 39 (40), 6300-6312
DOI 10.1038/s41388-020-01435-4, PubMed 32843722

Wise JF, Nakken S, Steen CB, Vodák D, Trøen G, Johannessen B, Lingjærde OC, Hilden V, Blaker YN, Bai B, Aasheim LB, Pasanen A, Lorenz S, Sveen A, Lothe RA, Myklebost O, Leppä S, Meza-Zepeda LA, Beiske K, Lawrence MS, Hovig E, Myklebust JH, Smeland EB, Holte H (2020)
Mutational dynamics and immune evasion in diffuse large B-cell lymphoma explored in a relapse-enriched patient series
Blood Adv, 4 (9), 1859-1866
DOI 10.1182/bloodadvances.2019001325, PubMed 32374878

Zhou J, Song Y, Zhan W, Wei X, Zhang S, Zhang R, Gu Y, Chen X, Shi L, Luo X, Yang L, Li Q, Bai B, Ye X, Zhai H, Zhang H, Jia X, Dong Y, Zhang J, Yang Z, Zhang H, Zheng Y, Xu W, Lai L, Yin L et al. (2020)
Thyroid imaging reporting and data system (TIRADS) for ultrasound features of nodules: multicentric retrospective study in China
Endocrine, 72 (1), 157-170
DOI 10.1007/s12020-020-02442-x, PubMed 32852733

Publications 2019

Chen Y, Tang L, Du Z, Zhong Z, Luo J, Yang L, Shen R, Cheng Y, Zhang Z, Han E, Lv Z, Yuan L, Yang Y, Cheng Y, Yang L, Wang S, Bai B, Chen Q (2019)
Factors influencing the performance of a diagnostic model including contrast-enhanced ultrasound in 1023 breast lesions: comparison with histopathology
Ann Transl Med, 7 (22), 647
DOI 10.21037/atm.2019.10.83, PubMed 31930048

Josefsson SE, Beiske K, Blaker YN, Førsund MS, Holte H, Østenstad B, Kimby E, Köksal H, Wälchli S, Bai B, Smeland EB, Levy R, Kolstad A, Huse K, Myklebust JH (2019)
TIGIT and PD-1 Mark Intratumoral T Cells with Reduced Effector Function in B-cell Non-Hodgkin Lymphoma
Cancer Immunol Res, 7 (3), 355-362
DOI 10.1158/2326-6066.CIR-18-0351, PubMed 30659053

Tang L, Chen Y, Du Z, Zhong Z, Chen Q, Yang L, Shen R, Cheng Y, Zhang Z, Han E, Lv Z, Yuan L, Yang Y, Cheng Y, Yang L, Wang S, Bai B, Luo J (2019)
A multicenter study of a contrast-enhanced ultrasound diagnostic classification of breast lesions
Cancer Manag Res, 11, 2163-2170
DOI 10.2147/CMAR.S194868, PubMed 30936748

Publications 2018

Vodák D, Lorenz S, Nakken S, Aasheim LB, Holte H, Bai B, Myklebost O, Meza-Zepeda LA, Hovig E (2018)
Sample-Index Misassignment Impacts Tumour Exome Sequencing
Sci Rep, 8 (1), 5307
DOI 10.1038/s41598-018-23563-4, PubMed 29593270

Våtsveen TK, Myhre MR, Steen CB, Wälchli S, Lingjærde OC, Bai B, Dillard P, Theodossiou TA, Holien T, Sundan A, Inderberg EM, Smeland EB, Myklebust JH, Oksvold MP (2018)
Artesunate shows potent anti-tumor activity in B-cell lymphoma
J Hematol Oncol, 11 (1), 23
DOI 10.1186/s13045-018-0561-0, PubMed 29458389

Xu M, Xiang Y, Liu X, Bai B, Chen R, Liu L, Li M (2018)
Long noncoding RNA SMRG regulates Drosophila macrochaetes by antagonizing scute through E(spl)mβ
RNA Biol, 16 (1), 42-53
DOI 10.1080/15476286.2018.1556148, PubMed 30526271

Publications 2017

Bollum LK, Huse K, Oksvold MP, Bai B, Hilden VI, Forfang L, Yoon SO, Wälchli S, Smeland EB, Myklebust JH (2017)
BMP-7 induces apoptosis in human germinal center B cells and is influenced by TGF-β receptor type I ALK5
PLoS One, 12 (5), e0177188
DOI 10.1371/journal.pone.0177188, PubMed 28489883

Guner G, Sirajuddin P, Zheng Q, Bai B, Brodie A, Liu H, Af Hällström T, Kulac I, Laiho M, De Marzo AM (2017)
Novel Assay to Detect RNA Polymerase I Activity In Vivo
Mol Cancer Res, 15 (5), 577-584
DOI 10.1158/1541-7786.MCR-16-0246, PubMed 28119429

Li F, Wang Y, Bai B, Wang S, Liu S (2017)
Advantages of Routine Ultrasound Combined With Contrast-Enhanced Ultrasound in Diagnosing Papillary Thyroid Carcinoma
Ultrasound Q, 33 (3), 213-218
DOI 10.1097/RUQ.0000000000000309, PubMed 28832401

Publications 2016

Bai B, Laiho M (2016)
Deep Sequencing Analysis of Nucleolar Small RNAs: RNA Isolation and Library Preparation
Methods Mol Biol, 1455, 231-41
DOI 10.1007/978-1-4939-3792-9_18, PubMed 27576723

Bai B, Laiho M (2016)
Deep Sequencing Analysis of Nucleolar Small RNAs: Bioinformatics
Methods Mol Biol, 1455, 243-8
DOI 10.1007/978-1-4939-3792-9_19, PubMed 27576724

Publications 2015

Bai B, Laiho M (2015)
Sequential recovery of macromolecular components of the nucleolus
Methods Mol Biol, 1228, 43-51
DOI 10.1007/978-1-4939-1680-1_5, PubMed 25311121

Publications 2014

Bai B, Liu H, Laiho M (2014)
Small RNA expression and deep sequencing analyses of the nucleolus reveal the presence of nucleolus-associated microRNAs
FEBS Open Bio, 4, 441-9
DOI 10.1016/j.fob.2014.04.010, PubMed 24918059

Bai B, Yegnasubramanian S, Wheelan SJ, Laiho M (2014)
RNA-Seq of the nucleolus reveals abundant SNORD44-derived small RNAs
PLoS One, 9 (9), e107519
DOI 10.1371/journal.pone.0107519, PubMed 25203660

Li M, Xu M, Wen S, Bai B, Chen R, Liu L (2014)
One novel long noncoding RNA lnc10 in Drosophila
J Genet Genomics, 41 (2), 79-82
DOI 10.1016/j.jgg.2013.12.007, PubMed 24576460

Peltonen K, Colis L, Liu H, Trivedi R, Moubarek MS, Moore HM, Bai B, Rudek MA, Bieberich CJ, Laiho M (2014)
A targeting modality for destruction of RNA polymerase I that possesses anticancer activity
Cancer Cell, 25 (1), 77-90
DOI 10.1016/j.ccr.2013.12.009, PubMed 24434211

Publications 2013

Bai B, Moore HM, Laiho M (2013)
CRM1 and its ribosome export adaptor NMD3 localize to the nucleolus and affect rRNA synthesis
Nucleus, 4 (4), 315-25
DOI 10.4161/nucl.25342, PubMed 23782956

Moore HM, Bai B, Matilainen O, Colis L, Peltonen K, Laiho M (2013)
Proteasome activity influences UV-mediated subnuclear localization changes of NPM
PLoS One, 8 (3), e59096
DOI 10.1371/journal.pone.0059096, PubMed 23554979

Publications 2012

Bai B, Laiho M (2012)
Efficient sequential recovery of nucleolar macromolecular components
Proteomics, 12 (19-20), 3044-8
DOI 10.1002/pmic.201200071, PubMed 22890538

Li M, Wen S, Guo X, Bai B, Gong Z, Liu X, Wang Y, Zhou Y, Chen X, Liu L, Chen R (2012)
The novel long non-coding RNA CRG regulates Drosophila locomotor behavior
Nucleic Acids Res, 40 (22), 11714-27
DOI 10.1093/nar/gks943, PubMed 23074190

Liu TT, Zhu D, Chen W, Deng W, He H, He G, Bai B, Qi Y, Chen R, Deng XW (2012)
A global identification and analysis of small nucleolar RNAs and possible intermediate-sized non-coding RNAs in Oryza sativa
Mol Plant, 6 (3), 830-46
DOI 10.1093/mp/sss087, PubMed 22986792

Publications 2011

Moore HM, Bai B, Boisvert FM, Latonen L, Rantanen V, Simpson JC, Pepperkok R, Lamond AI, Laiho M (2011)
Quantitative proteomics and dynamic imaging of the nucleolus reveal distinct responses to UV and ionizing radiation
Mol Cell Proteomics, 10 (10), M111.009241
DOI 10.1074/mcp.M111.009241, PubMed 21778410

Publications 2007

He S, Liu C, Skogerbø G, Zhao H, Wang J, Liu T, Bai B, Zhao Y, Chen R (2007)
NONCODE v2.0: decoding the non-coding
Nucleic Acids Res, 36 (Database issue), D170-2
DOI 10.1093/nar/gkm1011, PubMed 18000000

Publications 2005

Deng W, Zhu X, Skogerbø G, Zhao Y, Fu Z, Wang Y, He H, Cai L, Sun H, Liu C, Li B, Bai B, Wang J, Jia D, Sun S, He H, Cui Y, Wang Y, Bu D, Chen R (2005)
Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression
Genome Res, 16 (1), 20-9
DOI 10.1101/gr.4139206, PubMed 16344563

Liu C, Bai B, Skogerbø G, Cai L, Deng W, Zhang Y, Bu D, Zhao Y, Chen R (2005)
NONCODE: an integrated knowledge database of non-coding RNAs
Nucleic Acids Res, 33 (Database issue), D112-5
DOI 10.1093/nar/gki041, PubMed 15608158

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