Publications 2024

Zhao Z, Zobolas J, Zucknick M, Aittokallio T (2024)
Tutorial on survival modeling with applications to omics data
Bioinformatics, 40 (3)
DOI 10.1093/bioinformatics/btae132, PubMed 38445722

Publications 2023

Flobak, Zobolas J, Vazquez M, S. Steigedal T, Thommesen L, Grislingås A, Niederdorfer B, Folkesson E, Kuiper M (2023)
Fine tuning a logical model of cancer cells to predict drug synergies: combining manual curation and automated parameterization
Frontiers in Systems Biology, 3, 20
DOI 10.3389/fsysb.2023.1252961, PublikaID 472

Publications 2022

Guragain P, Båtnes AS, Zobolas J, Olsen Y, Bones AM, Winge P (2022)
IIb-RAD-sequencing coupled with random forest classification indicates regional population structuring and sex-specific differentiation in salmon lice (Lepeophtheirus salmonis)
Ecol Evol, 12 (4), e8809
DOI 10.1002/ece3.8809, PubMed 35414904

Zobolas J, Monteiro PT, Kuiper M, Flobak Å (2022)
Boolean function metrics can assist modelers to check and choose logical rules
J Theor Biol, 538, 111025
DOI 10.1016/j.jtbi.2022.111025, PubMed 35085537

Publications 2021

Touré V, Zobolas J, Kuiper M, Vercruysse S (2021)
CausalBuilder: bringing the MI2CAST causal interaction annotation standard to the curator
Database (Oxford), 2021
DOI 10.1093/database/baaa107, PubMed 33547799

Zobolas J, Touré V, Kuiper M, Vercruysse S (2021)
UniBioDicts: Unified access to Biological Dictionaries
Bioinformatics, 37 (1), 143-144
DOI 10.1093/bioinformatics/btaa1065, PubMed 33367853

Publications 2020

Vercruysse S, Zobolas J, Touré V, Andersen MK, Kuiper M (2020)
VSM-box: general-purpose interface for biocuration and knowledge representation
Preprints, 1, 1
PublikaID 397

Zobolas J, Kim JD, Kuiper M, Vercruysse S (2020)
Linking PubDictionaries with UniBioDicts to support Community Curation
BioHackrXiv, BioHackathon Europe 2020, 1
DOI 10.37044/osf.io/gzfa8, PublikaID 396

Zobolas J, Kuiper M, Flobak (2020)
emba: R package for analysis and visualization of biomarkers in boolean model ensembles
Journal of Open Source Software, 5 (53), 2583
DOI 10.21105/joss.02583, PublikaID 395

Publications 2019

Perfetto L, Acencio ML, Bradley G, Cesareni G, Del Toro N, Fazekas D, Hermjakob H, Korcsmaros T, Kuiper M, Lægreid A, Lo Surdo P, Lovering RC, Orchard S, Porras P, Thomas PD, Touré V, Zobolas J, Licata L (2019)
CausalTAB: the PSI-MITAB 2.8 updated format for signalling data representation and dissemination
Bioinformatics, 35 (19), 3779-3785
DOI 10.1093/bioinformatics/btz132, PubMed 30793173