Rapid and sensitive homology searches. Both online searches powered by part of the Titan cluster and downloadable executables (distributed by Sencel Bioinformatics) are available.

PARALIGN is used to derive homology networks that may be analysed using the PubGene tool. PARALIGN may also be run through that system.

PARALIGN is available here:
http://www.paralign.org/

RNAmmer locates ribosomal RNA genes in genomic sequences.

RNAmmer is available here:
http://www.cbs.dtu.dk/services/RNAmmer/