NEWS & EVENTS | OSLO UNIVERSITETSSYKEHUS - HOSPITAL PAGES IN NORWEGIAN

Publications:

2000

  1. Perou CM, Sorlie T, Eisen MB, van de Rijn M, Jeffrey SS, Rees CA, Pollack JR, Ross DT, Johnsen H, Akslen LA, Fluge O, Pergamenschikov A, Williams C, Zhu SX, Lonning PE, Borresen-Dale AL, Brown PO, Botstein D (2000) Molecular portraits of human breast tumours. Nature 406: 747-52.

2001

  1. Forus A, Sørlie T, Børresen-Dale A, Myklebost O (2001) Mikromatriser i kreftforskning - nå trenger vi ikke lete bare under gatelyktene! [Microarray technology and its potential in cancer research]. Tidsskr Nor Lægeforen 121: 2498-503. Prize for best popularised article in this journal in 2001.

  2. Jenssen TK, Laegreid A, Komorowski J, Hovig E (2001) A literature network of human genes for high-throughput analysis of gene expression. Nat Genet 28: 21-8.

  3. Komorowski J, Hvidsten TR, Jenssen TK, Tjeldvoll D, Hovig E, Laegreid A, Sandvik AK (2001) [New knowledge derived from measurement of gene expression with the DNA microarray method]. Tidsskr Nor Laegeforen 121: 1229-32.

  4. Kristensen, VN, D. Kelefiotis, Kristensen T, Borresen-Dale AL (2001). "High-throughput methods for detection of genetic variation." Biotechniques 30(2): 318-22, 324, 326 passim.

  5. Lønning PE, Sørlie T, Perou CM, Brown PO, Botstein D, Børresen-Dale A.-L. (2001) Microarrays in primary breast cancer – lessons from chemotherapy studies. Endocr. Relat Cancer 8(3): 259-63, 2001.

  6. Sandvik AK, Storen O, Norsett K, Laegreid A, Borresen-Dale AL, Myklebost O (2001) [Measurement of gene activity by DNA microarrays]. Tidsskr Nor Laegeforen 121: 1225-8.

  7. Sorlie T, Perou CM, Tibshirani R, Aas T, Geisler S, Johnsen H, Hastie T, Eisen MB, van de Rijn M, Jeffrey SS, Thorsen T, Quist H, Matese JC, Brown PO, Botstein D, Eystein Lonning P, Borresen-Dale AL (2001) Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications. Proc Natl Acad Sci U S A 98: 10869-74.

2002

  1. Dickens DS, Kozielski R, Khan J, Forus A, Cripe TP (2002). "Cyclooxygenase-2 expression in pediatric sarcomas." Pediatric and Developemental Pathology 5(4): 356-364.

  2. Jeffrey, S. S., M. J. Fero, Børresen-Dale A-L, Botstein D (2002). "Expression Array Technology in the Diagnosis and Treatment of Breast Cancer." Molecular Interventions 2(2): 101-109. Jenssen, T. K., W. P. Kuo, Stokke T, Hovig E. (2002). Associations between gene expressions in breast cancer and patient survival. Human Genetics 111(4-5): 411-420.

  3. Jenssen, T. K., Langaas M, Kuo WP, Smith-Sørensen B, Myklebost O, Hovig E (2002). "Analysis of repeatability in spotted cDNA microarrays." Nucleic Acids Res 30(14): 3235-44.

  4. Pollack, J.R., Sørlie, T., Perou, C.M., Rees, C., Eisen, M., Jeffrey, S.., Lønning, P-E., Tibshirani, R., Botstein, D., Børresen-Dale, A.-L. and Brown, P. (2002). "Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors." Proc Natl Acad Sci U S A 99: 12963-12968.

  5. Rosenwald A, Wright G, Chan WC, Connors JM, Campo E, Fisher RI, Gascoyne RD, Muller-Hermelink HK, Smeland EB, Giltnane JM, Hurt EM, Zhao H, Averett L, Yang L, Wilson WH, Jaffe ES, Simon R, Klausner RD, Powell J, Duffey PL, Longo DL, Greiner TC, Weisenburger DD, Sanger WG, Dave BJ, Lynch JC, Vose J, Armitage JO, Montserrat E, Lopez-Guillermo A, Grogan TM, Miller TP, LeBlanc M, Ott G, Kvaloy S, Delabie J, Holte H, Krajci P, Stokke T, Staudt LM (2002) The use of molecular profiling to predict survival after chemotherapy for diffuse large-B-cell lymphoma. N Engl J Med 346: 1937-47.

  6. Skotheim RI, Monni O, Mousses S, Fossa SD, Kallioniemi OP, Lothe RA, Kallioniemi A (2002) New insights into testicular germ cell tumorigenesis from gene expression profiling Cancer Res 62: 2359-64.

  7. Wang J, Delabie J, Aasheim HC, Smeland E, Myklebost O (2002). "Clustering of the SOM easily reveals distinct gene expression patterns: results of a reanalysis of lymphoma study” BMC Bioinformatics 3: 36 (9p).

  8. Wang J, Nygaard V, Smith-Sørensen B, Hovig E, Myklebost O (2002). "MArray: analysing single, replicated or reversed microarray experiments." Bioinformatics 18(8): 1139-40.

  9. Zhao, H., Hastie, T., Børresen-Dale, A.-L., Jeffrey, S. S. (2002) Optimization and evaluation of T7 based linear amplification methods for cDNA microarray analyses. BMC-Genomics 3: 31

2003

  1. Børresen-Dale, A.-L.: Genetic profiling of breast cancer: from molecular portraits to clinical utility. Int J Biol Markers. 2003 Jan-Mar;18(1):54-6

  2. Cekaite L, Haug O, Myklebost O, Aldrin M, Østenstad B, Holden M, Frigessi A, Hovig E, Sioud M. Analysis of the humoral immune response to immunoselected phagedisplayed peptides by a microarray-based method. Submitted

  3. Cekaite L, Hovig E, Hauge HH (2003) Double sided Silicon strip detectors: New applications within Genomics and Pr oteomics. Nuclear Instruments and Methods in Physics. In press.

  4. Lyng H, Baidee A, Svendsrud DH, Hovig E, Myklebost O, Stokke T (2003). "Profound influence of non-linearity in microarray scanners on gene expression ratios: Analysis an procedure for correction." Submitted.

  5. Nygaard V, Løland A, Holden M, Langaas M, Rue H, Myklebost O, Hovig E. mRNA amplification from small cell numbers. Submitted

  6. Nygaard V, Loland A, Holden M, Langaas M, Rue H, Liu F, Myklebost O, Fodstad Ø, Hovig E, Smith-Sorensen B (2003) Effects of mRNA amplification on gene expression ratios in cDNA experiments estimated by analysis of variance. BMC Genomics 4:11

  7. Rosenwald A, Wright G, Wiestner A, Chan WC, Connors JM, Campo E, Gascoyne RD, Grogan TM, Muller-Hermelink HK, Smeland EB, Chiorazzi M, Giltnane JM, Hurt EM, Zhao H, Averett L, Henrickson S, Yang L, Powell J, Wilson WH, Jaffe ES, Simon R, Klausner RD, Montserrat E, Bosch F, Greiner TC, Weisenburger DD, Sanger WG, Dave BJ, Lynch JC, Vose J, Armitage JO, Fisher RI, Miller TP, LeBlanc M, Ott G, Kvaloy S, Holte H, Delabie J, Staudt LM.. The proliferation gene expression signature is a quantitative integrator of oncogenic events that predicts survival in mantle cell lymphoma. Cancer Cell. 2003 3:185-97

  8. Rosenwald A, Wright G, Leroy K, Yu X, Gaulard P, Gascoyne RD, Chan WC, Zhao H, Haioun C, Greiner TC, Weisenburger DD, Lynch JC, Vose J, Armitage JO, Smeland EB, Kvaloy S, Holte H, Delabie J, Campo E, Montserrat E, Lopez-Guillermo A, Ott G, Muller-Hermelink HK, Connors JM, Braziel R, Grogan R, Fisher RI, Miller TP, LeBlanc M, Chiorazzi M, Zhao H, Yang L, Powell J, Wilson WH, Jaffe ES, Simon R, Klausner RD, Staudt LM (for the Lymphoma/Leukemia Molecular Profiling Project). Molecular Diagnosis of Primary Mediastinal B Cell Lymphoma Identifies a Clinically Favorable Subgroup of Diffuse Large B Cell Lymphoma Related to Hodgkin Lymphoma J. Exp. Med, in press.

  9. Schaner ME, Ross DT, Ciaravino G, Sørlie T, Troyanskaya O, Diehn M, Wang YC, Duran GE, Sikic TL, Caldeira S, Skomedal H, Tu I-P, Hernandez-Boussard T, Johnson SW, O’Dwyer PJ, Fero MJ, Kristensen GB, Børesen-Dale A-L, Hastie T, Tibshirani R, van de Rijn M, Teng NN, Longacre TA, Botstein D, Brown P, Botstein D, Sikic BI. (2003) Gene expression patterns in ovarian epithelial carcinomas Mol. Biol.Cell. In press

  10. Stokke T, Kristiansen E, Landsverk KS, DeAngelis P, Ree AH, Myklebost O, Hovig E, Lyng H. The response of malignant B lymphocytes to ionizing radiation: mRNA expression and genotypes Submitted.

  11. Sørlie T, Tibshirani R, Parker J, Hastie T, Marron JS, Nobel A, Deng S, Johnsen H, Pesich R, Geisler S, Perou CM, Lønning PE, Brown PO, Børresen-Dale A-L, Botstein D. (2003) Repeated observation of breast tumor subtypes in independent gene expression data sets. Proc Natl Acad Sci U S A, 100, 8418-8423

  12. Sørlie T, Børresen-Dale A-L and Botstein D. Expression profiling of breast cancer: From molecular portraits to clinical utility. In: Oncogenomics: Molecular approaches to cancer". by Wiley & Sons. In press 2003

  13. Trøen G, Nygaard V, Jenssen TK, Ikonomou IM, Tierens A, Matutes E, Gruszka-Westwood A, Catovsky D, Myklebost O, Lauritzsen G, Hovig E, Delabie J. Constitutive expression of the AP-1 transcription factors c-jun, junD, junB and c-fos and the marginal zone B-cell transcription factor Notch2 in splenic marginal zone lymphoma. Submitted.

  14. Wang J, Myklebost O, Hovig E (2003) MGraph: graphical models for microarray data analysis. Bioinformatics in press

  15. Wang J, Meza-Zepeda LA, Kresse SH, Myklebost O. M-CGH: Analysing microarray-based CGH experiments. Submitted


 
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